Lyric discussion by mikeware 

Cover art for Heat lyrics by David Bowie

The lyric actually begins "Then we saw Mishima's Dog," not "mission is dark." Always best to check the artist's website to avoid misinterpretation.

Mishima's Dog is a direct reference to Yukio Mishima's noval "Spring Snow"--where a black dog becomes trapped in the rocks of a waterfall--an omen of things to come.

I would interpret the lyrics overall as that of a ronin--a samuri without a master ("I don't know who I am").