Lyric discussion by Shezzie 

Cover art for Naked lyrics by Goo Goo Dolls, The

I think this song is about being alone, as most of the things mentioned in the song point to this.

People who are alone are often not noticed and fade from the world, like the shots in the dark from emptied guns they are not heard and their attemps are pointless, you can't take back what you have become and how you got there.