Lyric discussion by rockwitchu 

Cover art for In The Morning lyrics by Kelis

Pharrell (the guy talking to Kelis) is having an affair it appears with his significant other. The woman he is sleeping with would be Kelis (the girl), and she is in denial that he loves her. When she says, "I hope you miss your flight" it means she doesn't want him to leave her and go back to his wife/girlfriend!